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Tree alignment
Results: 92

#	Item
11	Algebraic Dynamic Programming 2.0 Robert Giegerich Faculty of Technology and Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany H´el`ene Touzet Add to Reading List Source URL: www.bioinf.uni-leipzig.de Language: English - Date: 2013-05-14 07:18:32 Computational phylogenetics Operations research Formal languages Tree alignment Dynamic programming Generalized tree alignment Mathematical optimization Rewriting Bioinformatics Context-free grammar
12	How to Compute a Large Tree (with or without an alignment) This talk •  Part 1: How to get a good alignment •  Part 2: How to get a good tree from a good Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2016-08-02 03:01:56 Computational phylogenetics Bioinformatics Sequence alignment Multiple sequence alignment MUSCLE Alignment Clustal Transcriptome
13	Implementing phylogenetic workflows for comparative genomics using BioPerl Jason E Stajich Dept of Plant and Microbial Biology University of California Berkeley, CA Add to Reading List Source URL: informatics.nescent.org Language: English - Date: 2016-04-13 13:52:31 Computational phylogenetics Bioinformatics Phylogenetics Multiple sequence alignment Sequence alignment Phylogenetic tree Homology Comparative genomics Nucleic acid sequence Molecular phylogenetics Clustal T-Coffee
14	A highly scalable algorithm for the extraction of cis-regulatory regions Alexandra M. Carvalho∗ INESC-ID Rua Alves Redol, Lisboa, Portugal Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:21 Gene expression Networks Bioinformatics Suffix tree Binary trees Tree traversal Gene regulatory network R-tree Rope Algorithm Planted motif search Tree alignment
15	WSEAS TRANSACTIONS on BIOLOGY and BIOMEDICINE S.M. Yiu P.Y. Chan T.W. Lam W.K. Sung H.F. Ting P.W.H. Wong Allowing Mismatches in Anchors for Whole Genome Alignment Add to Reading List Source URL: www.wseas.us Language: English - Date: 2008-03-13 05:22:34 Bioinformatics Computational phylogenetics Nucleic acids Suffix tree Evolutionary biology Molecular biology MUMmer Multiple sequence alignment Sequence alignment Conserved sequence Nucleic acid sequence Homology
16	Pacific Symposium on Biocomputing 13:October 2, :11 Add to Reading List Source URL: psb.stanford.edu Language: English - Date: 2015-08-18 15:12:16 Computational phylogenetics Bioinformatics Multiple sequence alignment Clustal ProbCons MUSCLE Sequence alignment MAFFT Tree alignment NeedlemanWunsch algorithm Gap penalty Phylogenetic tree
17	BIOINFORMATICS APPLICATIONS NOTE Sequence analysis Vol. 28 no, pages 2685–2686 doi:bioinformatics/bts507 Add to Reading List Source URL: www.megasoftware.net Language: English - Date: 2016-01-11 15:52:39 Computational phylogenetics Bioinformatics Phylogenetic tree Multiple sequence alignment Sequence alignment Phylogenetics Mega Maximum parsimony Clustal FASTA MEGA Molecular Evolutionary Genetics Analysis
18	Kevin J. Liu Homepage: http://www.cse.msu.edu/~kjl Email: Office: Department of Computer Science & Engineering Add to Reading List Source URL: www.cse.msu.edu Language: English - Date: 2016-07-19 17:04:30 Computational phylogenetics Bioinformatics Phylogenetics Guggenheim Fellows Genomics Tandy Warnow Comparative genomics Sequence alignment Multiple sequence alignment Phylogenetic comparative methods Phylogenetic tree Phylo
19	MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Koichiro Tamura,* Joel Dudley,* Masatoshi Nei,à and Sudhir Kumar§* Center for Evolutionary Functional Genomics, The Biodesign Institute, Ar Add to Reading List Source URL: www.megasoftware.net Language: English* - Date: 2016-01-11 15:52:39 Computational phylogenetics Bioinformatics Phylogenetics Markov models Masatoshi Nei Sequence alignment Substitution model Phylogenetic tree Models of DNA evolution Nucleic acid sequence MEGA Molecular Evolutionary Genetics Analysis Nucleotide diversity
20	Theoretical Computer Science–118 www.elsevier.com/locate/tcs A few logs suce to build (almost) all trees: Part II Peter L. Erd˝osa;∗ , Michael A. Steelb , Laszlo A. Szekelyc , Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2000-08-25 17:14:05 Computational phylogenetics Neighbor joining Matrix Binary tree Tree Tree alignment Bayesian inference in phylogeny